Detailed information of SNP:
|
SNP ID:
sf1210704482(Gbrowse)
Chromosome: chr12 Position: 10704482 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.69% | 39.31% |
| All Indica | 799 | 73.59% | 26.41% |
| All Japonica | 496 | 34.68% | 65.32% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 61.07% | 38.93% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 334 | 30.54% | 69.46% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210704482 | T->C | INTERGENIC | None |