Detailed information of SNP:
|
SNP ID:
sf1210720890(Gbrowse)
Chromosome: chr12 Position: 10720890 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.36% | 42.64% |
| All Indica | 799 | 68.34% | 31.66% |
| All Japonica | 497 | 34.81% | 65.19% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 60.00% | 40.00% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210720890 | T->C | INTERGENIC | None |