Detailed information of SNP:
|
SNP ID:
sf1210721447(Gbrowse)
Chromosome: chr12 Position: 10721447 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.33% | 42.67% |
| All Indica | 798 | 47.87% | 52.13% |
| All Japonica | 497 | 64.99% | 35.01% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 43.20% | 56.80% |
| Indica II | 212 | 63.68% | 36.32% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 68.96% | 31.04% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210721447 | T->A | INTERGENIC | None |