Detailed information of SNP:
|
SNP ID:
sf1210729028(Gbrowse)
Chromosome: chr12 Position: 10729028 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.18% | 43.82% |
| All Indica | 797 | 47.18% | 52.82% |
| All Japonica | 497 | 66.00% | 34.00% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 43.20% | 56.80% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210729028 | A->G | INTERGENIC | None |