Detailed information of SNP:
|
SNP ID:
sf1210747794(Gbrowse)
Chromosome: chr12 Position: 10747794 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 92.11% | 7.89% |
| All Indica | 774 | 94.19% | 5.81% |
| All Japonica | 474 | 87.76% | 12.24% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 363 | 91.74% | 8.26% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 201 | 94.03% | 5.97% |
| Temperate Japonica | 313 | 84.98% | 15.02% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210747794 | C->T | INTERGENIC | None |