Detailed information of SNP:
|
SNP ID:
sf1210758830(Gbrowse)
Chromosome: chr12 Position: 10758830 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.75% | 26.25% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 497 | 34.81% | 65.19% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210758830 | A->C | LOC_Os12g18630(LOC_Os12g18630.1) | INTRON |