Detailed information of SNP:
|
SNP ID:
sf1210762658(Gbrowse)
Chromosome: chr12 Position: 10762658 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 66.29% | 33.71% |
| All Indica | 796 | 97.24% | 2.76% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210762658 | A->G | INTERGENIC | None |