Detailed information of SNP:
|
SNP ID:
sf1210767881(Gbrowse)
Chromosome: chr12 Position: 10767881 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.35% | 49.65% |
| All Indica | 799 | 42.80% | 57.20% |
| All Japonica | 496 | 67.34% | 32.66% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 41.60% | 58.40% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 334 | 72.46% | 27.54% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210767881 | A->G | INTERGENIC | None |