Detailed information of SNP:
|
SNP ID:
sf1210771965(Gbrowse)
Chromosome: chr12 Position: 10771965 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.81% | 7.19% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 74.03% | 25.97% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210771965 | T->A | LOC_Os12g18650(LOC_Os12g18650.7) | INTRON |
| sf1210771965 | T->A | LOC_Os12g18650(LOC_Os12g18650.6) | INTRON |
| sf1210771965 | T->A | LOC_Os12g18650(LOC_Os12g18650.4) | INTRON |
| sf1210771965 | T->A | LOC_Os12g18650(LOC_Os12g18650.2) | INTRON |
| sf1210771965 | T->A | LOC_Os12g18650(LOC_Os12g18650.5) | INTRON |
| sf1210771965 | T->A | LOC_Os12g18650(LOC_Os12g18650.1) | INTRON |
| sf1210771965 | T->A | LOC_Os12g18650(LOC_Os12g18650.3) | INTRON |