Detailed information of SNP:
|
SNP ID:
sf1210795750(Gbrowse)
Chromosome: chr12 Position: 10795750 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 89.09% | 10.91% |
| All Indica | 783 | 89.02% | 10.98% |
| All Japonica | 496 | 88.71% | 11.29% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 368 | 88.32% | 11.68% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210795750 | C->T | INTERGENIC | None |