Detailed information of SNP:
|
SNP ID:
sf1210816086(Gbrowse)
Chromosome: chr12 Position: 10816086 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 53.17% | 46.83% |
| All Indica | 794 | 71.79% | 28.21% |
| All Japonica | 486 | 20.58% | 79.42% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 372 | 60.22% | 39.78% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 326 | 13.80% | 86.20% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210816086 | A->T | INTERGENIC | None |