Detailed information of SNP:
|
SNP ID:
sf1210830998(Gbrowse)
Chromosome: chr12 Position: 10830998 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 60.35% | 39.65% |
| All Indica | 751 | 39.55% | 60.45% |
| All Japonica | 497 | 87.12% | 12.88% |
| Aus | 53 | 92.45% | 7.55% |
| Indica I | 345 | 33.04% | 66.96% |
| Indica II | 204 | 58.33% | 41.67% |
| Indica Intermediate | 202 | 31.68% | 68.32% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210830998 | A->G | LOC_Os12g18729(LOC_Os12g18729.5) | UTR_3_PRIME |
| sf1210830998 | A->G | LOC_Os12g18729(LOC_Os12g18729.4) | UTR_3_PRIME |
| sf1210830998 | A->G | LOC_Os12g18729(LOC_Os12g18729.3) | UTR_3_PRIME |
| sf1210830998 | A->G | LOC_Os12g18729(LOC_Os12g18729.2) | UTR_3_PRIME |
| sf1210830998 | A->G | LOC_Os12g18729(LOC_Os12g18729.1) | UTR_3_PRIME |