Detailed information of SNP:
|
SNP ID:
sf1210853995(Gbrowse)
Chromosome: chr12 Position: 10853995 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 72.41% | 27.59% |
| All Indica | 707 | 96.89% | 3.11% |
| All Japonica | 486 | 33.74% | 66.26% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 315 | 98.41% | 1.59% |
| Indica II | 206 | 92.23% | 7.77% |
| Indica Intermediate | 186 | 99.46% | 0.54% |
| Temperate Japonica | 328 | 31.40% | 68.60% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 64 | 45.31% | 54.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210853995 | T->C | INTERGENIC | None |