Detailed information of SNP:
|
SNP ID:
sf1210882558(Gbrowse)
Chromosome: chr12 Position: 10882558 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 58.00% | 42.00% |
| All Indica | 796 | 44.22% | 55.78% |
| All Japonica | 491 | 73.93% | 26.07% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 41.71% | 58.29% |
| Indica II | 211 | 59.24% | 40.76% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 330 | 79.09% | 20.91% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210882558 | A->G | INTERGENIC | None |