Detailed information of SNP:
|
SNP ID:
sf1210981902(Gbrowse)
Chromosome: chr12 Position: 10981902 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 87.08% | 12.92% |
| All Indica | 789 | 77.31% | 22.69% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 64.50% | 35.50% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 208 | 83.65% | 16.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210981902 | G->A | LOC_Os12g18930(LOC_Os12g18930.1) | Synonymous |