Detailed information of SNP:
|
SNP ID:
sf1210991000(Gbrowse)
Chromosome: chr12 Position: 10991000 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.14% | 18.86% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 495 | 64.44% | 35.56% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 333 | 64.86% | 35.14% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210991000 | C->T | INTERGENIC | None |