Detailed information of SNP:
|
SNP ID:
sf1210992829(Gbrowse)
Chromosome: chr12 Position: 10992829 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 73.51% | 26.49% |
| All Indica | 793 | 94.20% | 5.80% |
| All Japonica | 497 | 38.83% | 61.17% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 205 | 97.56% | 2.44% |
| Temperate Japonica | 335 | 39.70% | 60.30% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210992829 | A->G | INTERGENIC | None |