Detailed information of SNP:
|
SNP ID:
sf1211005627(Gbrowse)
Chromosome: chr12 Position: 11005627 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 92.22% | 7.78% |
| All Indica | 786 | 92.75% | 7.25% |
| All Japonica | 493 | 91.08% | 8.92% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 366 | 90.16% | 9.84% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211005627 | G->A | INTERGENIC | None |