Detailed information of SNP:
|
SNP ID:
sf1211060236(Gbrowse)
Chromosome: chr12 Position: 11060236 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 96.94% | 3.06% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 483 | 91.72% | 8.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 59.77% | 40.23% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211060236 | G->A | LOC_Os12g19040(LOC_Os12g19040.1) | INTRON |