Detailed information of SNP:
|
SNP ID:
sf1211075215(Gbrowse)
Chromosome: chr12 Position: 11075215 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 65.98% | 34.02% |
| All Indica | 746 | 39.54% | 60.46% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 24.57% | 75.43% |
| Indica II | 199 | 65.33% | 34.67% |
| Indica Intermediate | 197 | 40.10% | 59.90% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211075215 | C->T | INTERGENIC | None |