Detailed information of SNP:
|
SNP ID:
sf1211082485(Gbrowse)
Chromosome: chr12 Position: 11082485 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1190 | 97.73% | 2.27% |
| All Indica | 649 | 96.15% | 3.85% |
| All Japonica | 428 | 100.00% | 0.00% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 277 | 93.50% | 6.50% |
| Indica II | 187 | 98.93% | 1.07% |
| Indica Intermediate | 185 | 97.30% | 2.70% |
| Temperate Japonica | 315 | 100.00% | 0.00% |
| Tropical Japonica | 55 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211082485 | C->T | LOC_Os12g19100(LOC_Os12g19100.1) | Non-Synonymous SNP |