Detailed information of SNP:
|
SNP ID:
sf1211094858(Gbrowse)
Chromosome: chr12 Position: 11094858 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.68% | 34.32% |
| All Indica | 799 | 69.21% | 30.79% |
| All Japonica | 497 | 70.02% | 29.98% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211094858 | C->T | INTERGENIC | None |