Detailed information of SNP:
|
SNP ID:
sf1211101182(Gbrowse)
Chromosome: chr12 Position: 11101182 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1349 | 54.86% | 45.14% |
| All Indica | 751 | 62.98% | 37.02% |
| All Japonica | 485 | 36.49% | 63.51% |
| Aus | 62 | 90.32% | 9.68% |
| Indica I | 350 | 69.43% | 30.57% |
| Indica II | 204 | 48.53% | 51.47% |
| Indica Intermediate | 197 | 66.50% | 33.50% |
| Temperate Japonica | 330 | 16.97% | 83.03% |
| Tropical Japonica | 89 | 86.52% | 13.48% |
| Japonica Intermediate | 66 | 66.67% | 33.33% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211101182 | C->T | INTERGENIC | None |