Detailed information of SNP:
|
SNP ID:
sf1211105850(Gbrowse)
Chromosome: chr12 Position: 11105850 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 86.43% | 13.57% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 495 | 71.52% | 28.48% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 85.03% | 14.97% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211105850 | G->A | INTERGENIC | None |