Detailed information of SNP:
|
SNP ID:
sf1211112148(Gbrowse)
Chromosome: chr12 Position: 11112148 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 94.38% | 5.62% |
| All Indica | 788 | 95.30% | 4.70% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 56 | 48.21% | 51.79% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 10 | 60.00% | 40.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211112148 | A->T | INTERGENIC | None |