Detailed information of SNP:
|
SNP ID:
sf1211119265(Gbrowse)
Chromosome: chr12 Position: 11119265 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1288 | 92.24% | 7.76% |
| All Indica | 724 | 90.75% | 9.25% |
| All Japonica | 474 | 96.62% | 3.38% |
| Aus | 41 | 70.73% | 29.27% |
| Indica I | 339 | 90.27% | 9.73% |
| Indica II | 194 | 90.72% | 9.28% |
| Indica Intermediate | 191 | 91.62% | 8.38% |
| Temperate Japonica | 324 | 98.77% | 1.23% |
| Tropical Japonica | 87 | 93.10% | 6.90% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211119265 | T->C | INTERGENIC | None |