Detailed information of SNP:
|
SNP ID:
sf1211141426(Gbrowse)
Chromosome: chr12 Position: 11141426 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 59.96% | 40.04% |
| All Indica | 739 | 81.60% | 18.40% |
| All Japonica | 482 | 23.24% | 76.76% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 331 | 77.04% | 22.96% |
| Indica II | 208 | 89.42% | 10.58% |
| Indica Intermediate | 200 | 81.00% | 19.00% |
| Temperate Japonica | 329 | 11.25% | 88.75% |
| Tropical Japonica | 88 | 62.50% | 37.50% |
| Japonica Intermediate | 65 | 30.77% | 69.23% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211141426 | T->G | LOC_Os12g19190(LOC_Os12g19190.1) | INTRON |