Detailed information of SNP:
|
SNP ID:
sf1211150724(Gbrowse)
Chromosome: chr12 Position: 11150724 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1137 | 88.65% | 11.35% |
| All Indica | 638 | 81.82% | 18.18% |
| All Japonica | 409 | 98.78% | 1.22% |
| Aus | 55 | 92.73% | 7.27% |
| Indica I | 288 | 97.92% | 2.08% |
| Indica II | 181 | 54.70% | 45.30% |
| Indica Intermediate | 169 | 83.43% | 16.57% |
| Temperate Japonica | 294 | 98.98% | 1.02% |
| Tropical Japonica | 69 | 100.00% | 0.00% |
| Japonica Intermediate | 46 | 95.65% | 4.35% |
| Group VI/Aromatic | 5 | 100.00% | 0.00% |
| Intermediate | 30 | 86.67% | 13.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211150724 | A->C | LOC_Os12g19220(LOC_Os12g19220.1) | INTRON |