Detailed information of SNP:
|
SNP ID:
sf1211175505(Gbrowse)
Chromosome: chr12 Position: 11175505 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 69.77% | 30.23% |
| All Indica | 799 | 83.48% | 16.52% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211175505 | G->A | LOC_Os12g19285(LOC_Os12g19285.1) | INTRON |