Detailed information of SNP:
|
SNP ID:
sf1211222127(Gbrowse)
Chromosome: chr12 Position: 11222127 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1172 | 96.08% | 3.92% |
| All Indica | 566 | 92.05% | 7.95% |
| All Japonica | 489 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 268 | 91.79% | 8.21% |
| Indica II | 155 | 94.84% | 5.16% |
| Indica Intermediate | 143 | 89.51% | 10.49% |
| Temperate Japonica | 327 | 99.69% | 0.31% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211222127 | C->G | LOC_Os12g19350(LOC_Os12g19350.2) | INTRON |
| sf1211222127 | C->G | LOC_Os12g19350(LOC_Os12g19350.1) | INTRON |