Detailed information of SNP:
|
SNP ID:
sf1211443227(Gbrowse)
Chromosome: chr12 Position: 11443227 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 97.92% | 2.08% |
| All Indica | 729 | 96.30% | 3.70% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 95.64% | 4.36% |
| Indica II | 190 | 96.32% | 3.68% |
| Indica Intermediate | 195 | 97.44% | 2.56% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211443227 | C->T | INTERGENIC | None |