Detailed information of SNP:
|
SNP ID:
sf1211448217(Gbrowse)
Chromosome: chr12 Position: 11448217 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 87.05% | 12.95% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 492 | 72.97% | 27.03% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 85.24% | 14.76% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211448217 | G->A | LOC_Os12g19640(LOC_Os12g19640.1) | INTRON |