Detailed information of SNP:
|
SNP ID:
sf1211530850(Gbrowse)
Chromosome: chr12 Position: 11530850 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 81.16% | 18.84% |
| All Indica | 778 | 78.15% | 21.85% |
| All Japonica | 494 | 93.32% | 6.68% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 362 | 88.12% | 11.88% |
| Indica II | 210 | 55.24% | 44.76% |
| Indica Intermediate | 206 | 83.98% | 16.02% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211530850 | G->C | LOC_Os12g19790(LOC_Os12g19790.1) | Non-Synonymous SNP |