Detailed information of SNP:
|
SNP ID:
sf1211530991(Gbrowse)
Chromosome: chr12 Position: 11530991 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 83.65% | 16.35% |
| All Indica | 783 | 79.69% | 20.31% |
| All Japonica | 491 | 94.50% | 5.50% |
| Aus | 59 | 40.68% | 59.32% |
| Indica I | 366 | 90.71% | 9.29% |
| Indica II | 211 | 55.92% | 44.08% |
| Indica Intermediate | 206 | 84.47% | 15.53% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211530991 | T->C | LOC_Os12g19790(LOC_Os12g19790.1) | Non-Synonymous SNP |