Detailed information of SNP:
|
SNP ID:
sf1211532962(Gbrowse)
Chromosome: chr12 Position: 11532962 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1266 | 54.90% | 45.10% |
| All Indica | 716 | 80.87% | 19.13% |
| All Japonica | 448 | 18.08% | 81.92% |
| Aus | 56 | 28.57% | 71.43% |
| Indica I | 329 | 79.03% | 20.97% |
| Indica II | 200 | 86.00% | 14.00% |
| Indica Intermediate | 187 | 78.61% | 21.39% |
| Temperate Japonica | 325 | 13.54% | 86.46% |
| Tropical Japonica | 70 | 27.14% | 72.86% |
| Japonica Intermediate | 53 | 33.96% | 66.04% |
| Group VI/Aromatic | 10 | 0.00% | 100.00% |
| Intermediate | 36 | 52.78% | 47.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211532962 | T->C | LOC_Os12g19790(LOC_Os12g19790.1) | INTRON |