Detailed information of SNP:
|
SNP ID:
sf1211533601(Gbrowse)
Chromosome: chr12 Position: 11533601 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 95.24% | 4.76% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 494 | 90.08% | 9.92% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 63.74% | 36.26% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211533601 | C->T | LOC_Os12g19790(LOC_Os12g19790.1) | SNPs that introduce stop codons |