Detailed information of SNP:
|
SNP ID:
sf1211533983(Gbrowse)
Chromosome: chr12 Position: 11533983 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 94.79% | 5.21% |
| All Indica | 790 | 94.81% | 5.19% |
| All Japonica | 481 | 95.84% | 4.16% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 371 | 94.34% | 5.66% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 83 | 78.31% | 21.69% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 8 | 75.00% | 25.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211533983 | A->T | INTERGENIC | None |