Detailed information of SNP:
|
SNP ID:
sf1211542418(Gbrowse)
Chromosome: chr12 Position: 11542418 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 65.25% | 34.75% |
| All Indica | 783 | 84.29% | 15.71% |
| All Japonica | 492 | 30.69% | 69.31% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 368 | 96.47% | 3.53% |
| Indica II | 207 | 63.77% | 36.23% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 90 | 80.00% | 20.00% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211542418 | C->T | INTERGENIC | None |