Detailed information of SNP:
|
SNP ID:
sf1211578829(Gbrowse)
Chromosome: chr12 Position: 11578829 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 98.04% | 1.96% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 464 | 94.40% | 5.60% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 99.38% | 0.62% |
| Tropical Japonica | 74 | 70.27% | 29.73% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211578829 | G->T | INTERGENIC | None |