Detailed information of SNP:
|
SNP ID:
sf1211585566(Gbrowse)
Chromosome: chr12 Position: 11585566 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 94.63% | 5.37% |
| All Indica | 796 | 95.35% | 4.65% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211585566 | T->C | LOC_Os12g19890(LOC_Os12g19890.1) | Non-Synonymous SNP |