Detailed information of SNP:
|
SNP ID:
sf1211594639(Gbrowse)
Chromosome: chr12 Position: 11594639 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 91.43% | 8.57% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 480 | 91.67% | 8.33% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 330 | 95.76% | 4.24% |
| Tropical Japonica | 83 | 79.52% | 20.48% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211594639 | A->T | INTERGENIC | None |