Detailed information of SNP:
|
SNP ID:
sf1211594807(Gbrowse)
Chromosome: chr12 Position: 11594807 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1305 | 97.55% | 2.45% |
| All Indica | 696 | 95.98% | 4.02% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 331 | 98.19% | 1.81% |
| Indica II | 182 | 92.31% | 7.69% |
| Indica Intermediate | 183 | 95.63% | 4.37% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211594807 | A->G | INTERGENIC | None |