Detailed information of SNP:
|
SNP ID:
sf1211617985(Gbrowse)
Chromosome: chr12 Position: 11617985 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 90.09% | 9.91% |
| All Indica | 798 | 86.59% | 13.41% |
| All Japonica | 492 | 93.90% | 6.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 330 | 92.12% | 7.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211617985 | G->A | LOC_Os12g19940(LOC_Os12g19940.1) | INTRON |