Detailed information of SNP:
|
SNP ID:
sf1211629801(Gbrowse)
Chromosome: chr12 Position: 11629801 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 68.40% | 31.60% |
| All Indica | 786 | 91.09% | 8.91% |
| All Japonica | 496 | 26.61% | 73.39% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 91.55% | 8.45% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211629801 | A->G | LOC_Os12g19980(LOC_Os12g19980.1) | Non-Synonymous SNP |