Detailed information of SNP:
|
SNP ID:
sf1211630949(Gbrowse)
Chromosome: chr12 Position: 11630949 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 97.68% | 2.32% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 35 | 77.14% | 22.86% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211630949 | G->A | LOC_Os12g19980(LOC_Os12g19980.1) | Non-Synonymous SNP |