Detailed information of SNP:
|
SNP ID:
sf1211638455(Gbrowse)
Chromosome: chr12 Position: 11638455 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 64.85% | 35.15% |
| All Indica | 775 | 90.32% | 9.68% |
| All Japonica | 471 | 18.47% | 81.53% |
| Aus | 60 | 86.67% | 13.33% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 196 | 85.20% | 14.80% |
| Indica Intermediate | 206 | 86.89% | 13.11% |
| Temperate Japonica | 332 | 5.42% | 94.58% |
| Tropical Japonica | 76 | 56.58% | 43.42% |
| Japonica Intermediate | 63 | 41.27% | 58.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211638455 | A->G | LOC_Os12g19990(LOC_Os12g19990.1) | Non-Synonymous SNP |