Detailed information of SNP:
|
SNP ID:
sf1211641104(Gbrowse)
Chromosome: chr12 Position: 11641104 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1327 | 69.18% | 30.82% |
| All Indica | 789 | 60.71% | 39.29% |
| All Japonica | 415 | 80.00% | 20.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 61.83% | 38.17% |
| Indica II | 210 | 63.81% | 36.19% |
| Indica Intermediate | 207 | 55.56% | 44.44% |
| Temperate Japonica | 273 | 89.74% | 10.26% |
| Tropical Japonica | 82 | 51.22% | 48.78% |
| Japonica Intermediate | 60 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211641104 | T->C | LOC_Os12g20000(LOC_Os12g20000.1) | Non-Synonymous SNP |