Detailed information of SNP:
|
SNP ID:
sf1211649448(Gbrowse)
Chromosome: chr12 Position: 11649448 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 65.84% | 34.16% |
| All Indica | 792 | 59.60% | 40.40% |
| All Japonica | 491 | 85.13% | 14.87% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 374 | 43.85% | 56.15% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 208 | 62.02% | 37.98% |
| Temperate Japonica | 331 | 93.66% | 6.34% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211649448 | A->C | INTERGENIC | None |