Detailed information of SNP:
|
SNP ID:
sf1211680749(Gbrowse)
Chromosome: chr12 Position: 11680749 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 94.35% | 5.65% |
| All Indica | 778 | 93.06% | 6.94% |
| All Japonica | 487 | 98.97% | 1.03% |
| Aus | 61 | 75.41% | 24.59% |
| Indica I | 367 | 94.55% | 5.45% |
| Indica II | 203 | 88.18% | 11.82% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211680749 | A->G | INTERGENIC | None |