Detailed information of SNP:
|
SNP ID:
sf1211695692(Gbrowse)
Chromosome: chr12 Position: 11695692 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1316 | 82.45% | 17.55% |
| All Indica | 705 | 68.37% | 31.63% |
| All Japonica | 489 | 99.39% | 0.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 332 | 53.61% | 46.39% |
| Indica II | 190 | 87.89% | 12.11% |
| Indica Intermediate | 183 | 74.86% | 25.14% |
| Temperate Japonica | 327 | 99.39% | 0.61% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211695692 | G->T | INTERGENIC | None |